NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10000830

Scaffold Ga0315909_10000830


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10000830 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41350
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (86.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006110Metagenome381Y
F007517Metagenome349Y
F017452Metagenome240Y
F031069Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000083019F006110AGGAMPRPKPPAPLKVRYVRLSDKQWIIFKQLGGLEWLRETLDKKAPMPKQYYDALLQEKLND
Ga0315909_1000083022F017452AGGAGMIHTDEDDEFERIERENTMKGQPYHYDVYVSPSQRNTVLEEVAKEIEKFKAFGPDTIGSFSAYIRDMKK
Ga0315909_1000083050F007517AGGAGMASLLEVLNKKLDEHVKQLVDVVSGGGAKSHDHYKELCGTIRGLQTAQYELADLVRKTKEYEDE
Ga0315909_1000083051F031069AGGAMSEFDVSAVDLSGVLNTSAEEKAKQVPDPATYHLLCML

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