Scaffold Ga0315909_10000593

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000593
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49075
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (79.69%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F000332	Metagenome / Metatranscriptome	1283	Y
F005117	Metagenome	411	Y
F005294	Metagenome	405	Y
F015975	Metagenome / Metatranscriptome	250	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F043830	Metagenome	155	N
F056420	Metagenome	137	Y
F068451	Metagenome	124	N
F072298	Metagenome	121	Y
F082375	Metagenome	113	N
F085338	Metagenome	111	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000059312	F015975	N/A	MNKPEVKIGCVANLYSLMMHFKKKGDTENGHVHQFDHLTLLASGALKVTVDGVVTEFKAPHMIYIHKDKYHELMALEDNTVAYCIHALRDINTMDIIDPSMIPEGVDPVLTSLPVNKFR
Ga0315909_1000059315	F000332	GGAG	MRWLILLLLLVLAGAVAKNGCYVREFYGIAYTIHNPSERHQQMSMWLTNNVRFCRSQDLVVIWNNLSEWAGSADSAELRGKVVHGYKDALDREKK
Ga0315909_1000059316	F005117	GGA	VKISYDKWYPVVQPNPPMQSEVFAKRVERLDAERAVQVQIDQQVKKFHQYEYEIYEYRMRQITLNIDITNLKRQIDKLV
Ga0315909_1000059323	F005294	GAG	MATILNTNLVYDPRYHTFESWASLMCEQYAAQQLCIPDSSTNWQDWASALKAIDVFSNEGIPGPFIFNDWQEWAEALVNAVNPSVN
Ga0315909_1000059328	F082375	GAG	MTPKQFINELFGEDWKSSQLPVFLDQIKVWAEDAQRYYVVRDFAKTQFNENPRDRKDCHEFDDLVDAKRFEQELDE
Ga0315909_1000059329	F043830	N/A	MNPYLNLDEIKEAFRKIYLEENYDFLEEDLQKLADGFIMAAVPAIVKTERDMCIKFVNSLNTNVARALGEYRENL
Ga0315909_1000059338	F090290	AGGAG	MDKQLPYTTKSGLQIGCRYTPPKRNDMSHDAELLQMALLNIEPEFSQRRIATWVAYALFLVALYTALVVWEV
Ga0315909_1000059341	F042295	AGGA	MSYASAKQRYAEKTTDTFDGPESHDCFANGCPMAGGISTGGKWVCAYHHQATSDMWPRVTEALRDAESIRVAINEVMKIDMISWGAMVNGYPPKWQEFAALFDDQPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKV
Ga0315909_1000059342	F085338	GAG	MTKHEAQKILDQIREGYGHAYTEACAIECLYLTGDLGAHEAMRSSGMDEQVREEGYRERLRWRAIMVARSKE
Ga0315909_1000059349	F000166	AGG	MPNIPTSEHAELFAQSVKNWQQVLNLGDWRIEKGLKPAKQAMASVEFNDGARLAIYRLGDFGAEKITPESLDKTALHELLHVFLHDLMTVAQDPKSSEDDLEKEEHRIINLLERLLSSKDSHGIK
Ga0315909_1000059350	F072298	N/A	MRPIVKAALAIPEMQFAFECICADDSRKFGKEITPDFYCDEVIVSEAEYRLSTYFEDGHINDDMRLGEEGAEGKKIAQKDVRMLKAFIKKYKTMDSMWSKYTNHLIK
Ga0315909_1000059351	F068451	AGGA	MTTTTALKIVDQLGLIEDQIAALQEQADDLKNQLKMLGQGSYAGTMYVTTIKHTPEKKTTAWSAVAKELNAPADLIAKHTKVTYNILAAETKALSN
Ga0315909_1000059354	F056420	GAGG	MTTLFKLEEHLMMLLVEDKICFEEGDWDHLAKIRMAIDDTRDQIESFKKVTA
Ga0315909_1000059355	F039525	AGG	MSETNMSPYIKGFNAGVDCVLTEIERLEKTGALSLDQLLKHLDPQRDQKMAQTPDKGAL