Scaffold Ga0315909_10000485

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000485
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53332
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (23.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019126	Metagenome / Metatranscriptome	231	Y
F031852	Metagenome	181	Y
F035632	Metagenome / Metatranscriptome	171	Y
F075718	Metagenome	118	Y
F095001	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000048519	F031852	N/A	MNIYIGDQAKKLFYMREVPVGSIGVFQSHVGEWLYWYSDGFTYDTGFADTEAEALQISKKNFRPYKK
Ga0315909_1000048540	F075718	N/A	MKPFEINTTAYDEENFVILTDLNETQIKKVIEPIVNREREDGIYYDNDMLIDALLDAYPENKFYYYNEPKLISI
Ga0315909_1000048548	F095001	N/A	MKAVIHMRGIYGGTFSQTKEFKDDKHLDNWLSWMDKNQNRVKVIGTKIL
Ga0315909_1000048558	F035632	N/A	MEKFLSIPVTNEQRQLLSATGIVLIEQESTTTVHVHYKASTGTDVVTITHAAAPAGNESMRDAIQNAVVSALTTSWTYVAFEVENLPFAVSGITIA
Ga0315909_1000048571	F019126	N/A	MAQKVTKTNAELLELVKALNITPAEKGSKAEAKLKKIAEKIKPLFEQYHEKREDIRLDNAHTESNGVLDLNEKGEYKFTKDGIKAMAKDMKALLDDTFEFYQFTFSSEGIESFKFLAGWVESIEAEQSAEEVE