NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10000451

Scaffold Ga0315909_10000451


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10000451 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54666
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (95.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F003266Metagenome / Metatranscriptome496Y
F009260Metagenome / Metatranscriptome320Y
F011292Metagenome / Metatranscriptome292Y
F035733Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000045115F000324AGGAGVIKPVFQKFHVVQDGAGLNVYHANAGEGLPRHEHAYSHLTFCHAGKCIVRKEGRELIMTKDTQPVNLVAGEWHEIEALEDGTVFVNVFAEGKS
Ga0315909_1000045134F009260GGGGGMAEYKQPVKTASSPAGVSDNKQYMREANVSVANSHSNDYKPTKTSGIKIRGTGAATKGVMARGPMA
Ga0315909_1000045141F003266GGAMGQHNDTVKHGMDVLAAIAAISSFLQLLTPIFGLIGAVWTLMRIAEMVSGKPFAVLIGRQKDDANAKQE
Ga0315909_1000045164F035733AGGAGMTTQQQHPHPDTFHFYAASVAQWATTNSERDLRQLIKLMDSDGHPYNLFLVPVSYDTNYEIKWFQPQVEGSQWLGHFVPKKGKK
Ga0315909_1000045181F011292AGGAGGMRPLSFDIDTAKEVVGDARMRTIESKARQDADNRKMDAPEVEGQSYWERVTAGMEYVVYAEAFNKRMARIQRMKERNK
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