Scaffold Ga0315909_10000252

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000252
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69302
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (34.40%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F030796	Metagenome	184	Y
F036676	Metagenome	169	Y
F090326	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_10000252108	F030796	N/A	MAQFTKDSELDTTLGSGITASDRRTCSTHFDQRRVLNASGVVVNSATSKTYTADGYYKISDFYPLTFNATGILQVNIREQRNCGNVVILNASGVEIIEASPSKLSSRQNSITTRTINASGTHYAYVELYGRSSASYKIGIDLYSS
Ga0315909_10000252116	F036676	N/A	MDRWVTTVGAVIALLTAIIGGTITIETRYAKSAEVKQQLEEYYAKQLKLRILEIDLKSSPTPADQALKQYLLQELRKEQ
Ga0315909_1000025223	F090326	N/A	MKCPVSLIFVSLFDLIMNTFTLATGRQVEKNATHCVAVKSRGRWNHQWFKSDRGAQNELKRLRSYSADTIAYYDIQEFKLIKPNT
Ga0315909_1000025270	F018919	AGGAGG	MAINANQLAVTRIYPGNYTNVLKYWHETKTVTYLNENGTSQTLTDQPVGGPVGVVFRPGWIAQQAVGYVDLSYQALGSINQMEYYTTPYASGGASNKPFTNGTAIIPSPDYHKDIRADITTGIKVPSGAYVYRVGLRVDGGDVVSSGVVGGVSSPKLGLGPGLGIGLSETPSASGFYATVVGSNSRITNGTWNSSNAWNAANMHRVTAETEYALATVGNLGGAAASGLAQASGVYDPRAGVGKLSGRNKALAICEVCWLLPDETPNRESLGLQPGGVVESSIYTSTSPT
Ga0315909_1000025276	F001215	N/A	MSSTSTNKSPCLIDRPFLRGARITSSTQTCNPSNPNLTDLIQLVRVGDLPSEDAALIEDITIVSNEDYPDQSGIRTADLGLYVYAPNQAAPSTSAALMVGRFEVGLSGSTHGYPQSVQLFGINAPVPQVGDTTIVAPIQLGKGEGLYLEKGYILCVGYIGTGPTAVSGGLSPSGITVWAQGGFY