Scaffold Ga0315909_10000141

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000141
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93987
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (71.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005563	Metagenome / Metatranscriptome	396	Y
F013086	Metagenome / Metatranscriptome	274	Y
F052599	Metagenome / Metatranscriptome	142	Y
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000014143	F052599	N/A	MKYWTIVFPGEFGQHVQETWSEDQIIESYYKYWYSKMVESNKHDKISRELCIDDWCVVHWAEETDEFGKRIKK
Ga0315909_1000014171	F013086	GAGG	MNEDRKLIGYTEREEGFYPMYEAKRDFVTTCAFIMCKYCRGAIASMGGPRYDAVCLTCYEKEPDER
Ga0315909_1000014173	F005563	GAG	MKTMIDYHEAIKEMHKGNVVKYVGTVNGNVMTDSGWSWCMCRGCIFPYNGEPIWKLSGRMIYDPDFRYVLTGETVDPRAWKPEKNTYRKEIKSKLGYSRIGLGNV
Ga0315909_1000014185	F067732	GGAG	MKITTAISILDKERNFLGIGFLELLQDIQKHGRMIYSEKTMMAFSVFMDEGAKLFATVDEDE