Scaffold Ga0315909_10000099

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000099
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110831
• Total Scaffold Genes: 175
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (52.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F001971	Metagenome / Metatranscriptome	609	Y
F009072	Metagenome / Metatranscriptome	323	Y
F010017	Metagenome / Metatranscriptome	309	Y
F014121	Metagenome / Metatranscriptome	265	Y
F017818	Metagenome / Metatranscriptome	238	Y
F018167	Metagenome	236	Y
F030059	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_10000099136	F018167	N/A	MIDFNTFELDRFSKLLSTIKDYTKDNLRFPKAGELVEKALAEYSNGLLTRVNLPGIDLIGPDKKTYESKVTQFQNKSEMAVRKVILKNRRKSGNYTDKLADYFIITDVKKGKMCCIPSSRFYKIKDNGSTVTAHADPELSDFFLTGYNDNKETRNYFDESDDFDLRFIRSI
Ga0315909_10000099144	F001971	GGAG	MTYEEFIHKGTEFYMEMVRLVDVKLKYRMEFTDQETEIKDHIMEFQHQVKLNELRDKFEKCLDIDNA
Ga0315909_10000099155	F000919	GGAGG	MRFRNIEFRWSKCNSKYELVKWHQNTNSETCYVIAFFDKDKEGYDMRTISSRFFEDKDAFVVGKYAIEFLNETFEIERHEEELK
Ga0315909_10000099160	F017818	N/A	MNKDAYYDWIAENDTYPEHSHKWIVALYNKYEGVEGLHRYFGVFETKEEAKVFAANYREKYTKPGFISSVRVFPLCEIVKDTF
Ga0315909_10000099161	F014121	N/A	MINTAYQIWETFKAGLKDEPTEDMKQALASSIRVISSIIHRDGVLANEPWLTHTAQELNEIADDVEAL
Ga0315909_10000099174	F030059	GGAG	MNDTINKNLTLIQEVATKALEELKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELDW
Ga0315909_1000009947	F009072	AGGA	MNKYNSEDYFTVRERRTHKKICDCGNFEDARMMMHLDGPNREIVKNKTLMSPVIDIEMPKALPTNEIAINTEPYKQHQEEWMVDKINQLPQIKLPEGQGQPVII
Ga0315909_1000009948	F010017	AGG	MNHRKRKQSENQKKKRMYTPDGYIVDPPDAECPYCGKKQKACSYVNSLSRAWARGACKKINTDKLQ