Scaffold Ga0315909_10000094

Overview

Basic Information

• Taxon OID: 3300031857
• Scaffold ID: Ga0315909_10000094
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112786
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (73.03%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008305	Metagenome / Metatranscriptome	335	Y
F011299	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315909_1000009427	F011299	N/A	MTKKHFKEIATILKYNSNKTHPAIFSKMVLDFAELCAKENSNFNVNKFYEASGYNVPNFSSK
Ga0315909_100000947	F008305	N/A	LASRTRRGILHRMLGYTYKDIQEFGTSLTVAIDSATDPSVKQGLLTIWDFFEGLLAEGYVQGESY