NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326514_10283145

Scaffold Ga0326514_10283145


Overview

Basic Information
Taxon OID3300031853 Open in IMG/M
Scaffold IDGa0326514_10283145 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1441
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0326514_102831452F057035GAGGMTEKEFLEKRTPIWLEGEDLHVSTPSSCDKNDMHAFLSKKYGYNWLFCLRGYYWPGSHVMLYIGDYECPNCTTLVAPYLFNYFPDIKYIGFGCNKGKPGEIWDPKILIVRNKSCLKDDIGSI
Ga0326514_102831455F064301AGGAMARSKITKETIKGPTKIPPVWQIGILFPDGKKISKPKCTLNEIFNTYFIGLDKYLNSNLTAEELLQKYKDTFTNKEIKIQINYIDSWGHTWRGKVAWPRENKFIEYLNKRLNE
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