NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326514_10000293

Scaffold Ga0326514_10000293


Overview

Basic Information
Taxon OID3300031853 Open in IMG/M
Scaffold IDGa0326514_10000293 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33877
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (22.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071326Metagenome / Metatranscriptome122Y
F072445Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0326514_1000029311F071326GGAGMAENMASKMLDQANKLYKIGLKGIKLQMDMLGTDFVVLRPKDNSKWKNVFGGAYSSDNTLENDYEQFTTKLIVNMNEMKDVWNRNQSQLQAFTNDGTLEVGDELQYTRDKRTYRFKVMSKQAFSEVADVWYTYILSSIVETLTN
Ga0326514_1000029314F072445N/AMATKVSDLVRGSDGYMNFIDYTNSYKDDNKEFLRGDMWEFKFINPPKIVYYPGDSIFKKRLNSVNVSTDSSVNGFEKRMRGNYVIFQKTGQSTSGSLTLSFVDKEDQAISYFVDDWKQKISDRDTKYSFRKDDLVADAQMVLTNSSRIAVRTLTFYNCIIQDAPLDESGVDADGSDRSDVQLSMNFEHYEREFNNL
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