NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307410_10853879

Scaffold Ga0307410_10853879


Overview

Basic Information
Taxon OID3300031852 Open in IMG/M
Scaffold IDGa0307410_10853879 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021723Metagenome / Metatranscriptome217Y
F022153Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0307410_108538791F022153N/AGPGRPGRESETERTVRVADPVGFTNAFGKLEQAIRELVGAGDVKERLKVATMTLVLIFPDDFPAGHLRDEYADIRQALAWPPPEEGSRQGLLSSNLEAMTEEEAGELAKSLFSLYTSAAEAMYGGLHGR
Ga0307410_108538792F021723GGAGGVPDANELKLLASRQEQAFHEKFGYLASEVPGIWVGQNVAVNMLGGRGKDRQLAPTRASGMLEAISLDSVVLSVEDRVVFIPRESILQMELHETRGRGSR

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