Scaffold Ga0307410_10512798

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307410_10512798

Scaffold Ga0307410_10512798

Overview

Basic Information
Taxon OID	3300031852 Open in IMG/M
Scaffold ID	Ga0307410_10512798 Open in IMG/M
Source Dataset Name	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	988
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5	Long. (^o)	-121.7	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020506	Metagenome	223	Y
F024778	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307410_105127981	F020506	N/A	SPKVAGQLSEQTLRQILCRWEDRGLIDRDRLLGFQWVAPTVKALRLVGLDVRGWSFVIPQLAHVHAVGVVRLALEPHIPAGGRWLSERELRREAGKSHVPDAAVQLPDDPEAAAGAGLYGEDVDPLPKRVAVEVELTRKAAARLREAWTRPRHGRWQRTVYYAPPEVAGYLTGQLQRIRPRHPIQIHLLLDVPGTTYLRSGGVS
Ga0307410_105127982	F024778	GGAGG	VTRSNHPAPGHGWQATPGQPIPRAARQPAANGLLLVMVLLVWFSPLSIVAWLLGQAVILLQRRWHWWRFTLAALAGIALVLLLLGPQEALRRHIFVPQHFWQYVALHFGFGPPGTRITISQFLWD

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