NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10568166

Scaffold Ga0315320_10568166


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10568166 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020899Metagenome221N
F048329Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_105681661F020899N/AKYIVLILFVILSCQPEELMIVEPLPQYEMIFEETESSVTDGQEFSFEIISEEEHHLVISKDGSVITKESFLPTLELNTRKIYTKTLPTDLLKLELINSNGIIKSTFIQIN
Ga0315320_105681662F048329N/AMFIFTEENISNIKNTVYTTDGMKEKHAEKIEYVKTKGLFKDFNFSKYFTKNPPKNSSIQTYQELLYLKDLPEDNDFVEKHDDIEGVMEEVCNEHNLTFPKDLVK
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