Scaffold Ga0315320_10263303

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10263303
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1244
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F004856	Metagenome / Metatranscriptome	421	Y
F015812	Metagenome / Metatranscriptome	252	Y
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_102633031	F003976	N/A	REYEYEKECILETLDKLEMSVRFLSVWVNEPMGLINAKYVLEKNSNRTYNLLDENMVKDLLEEVNNES
Ga0315320_102633032	F004856	GGAGG	MSDWLDGTKPKIIEARYSAYLSWDLDELGIDWDDIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLN
Ga0315320_102633034	F015812	GAGG	MSKTLYKRLEDICAREYVVNKLSEDKFRTFVDFLYDDMRTWDRPTDVSDVDVIHRIEEHLSYMVSRRLADTHIGTNHD
Ga0315320_102633035	F106085	AGG	MTNNPLERLRKKLLFLLDNTKNKFTILKKPSKNNKIIINKDIKNNIPKHLKGLDNKQLKDLQNLFKMRI