Scaffold Ga0315320_10129332

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10129332
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1909
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F027481	Metagenome / Metatranscriptome	194	Y
F073432	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1012933210	F073432	N/A	MTINNHDTVIKLADKGEVFEYHVGYLARDRFYNNDVRDKANLLMRLAENNIVELYQKRLTHGNINSDPKFQYLARKI
Ga0315320_101293322	F008684	AGGGGG	MIDKNFELACELADDLYFKFIDNLSDDIASEFVVDDDDNIGSTKNTEKGSNLYWELESTIKNALDKQTESEGK
Ga0315320_101293323	F027481	GAGG	MAKKYLVKFNCIIGEYEHITSYIFDKRMTEYQYCKKFWGLEKKHELKTNVFWDNFMENAIEVYSETELTTDQYNTMQKLGVA