NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10090535

Scaffold Ga0315320_10090535


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10090535 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2345
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034245Metagenome / Metatranscriptome175N
F089156Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_100905352F034245GAGMRGVTFSEFGGGKNVDMFVQAPIAKPSTPMHEAINTAKQIRNTFQKDLYVWCDYSVQHIYSQLAMQAFTMAGIEFVAAIPVLSNGLTKRENECSIAYCEQRSIPYELFHIDVEELFNGPELEKYGEMFPTTQPQMTIAGKFFDILPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHQTQEHAAEVFGKEYTNFQEHYVDMYTSWMFTPSYGEVLKSPTQDFVDNAPHRYYQYEIRTIKQAGFDIKPTIQKLIGIELLKSHFGHDKYDSELRQRLAPFGPLTLKYASLQYTVKVDTRLKEMLEAHHDTSFDFINKLF
Ga0315320_100905353F089156N/ATMLIIQFLDTIDTSTLPVEIVQSFKHNTYLLDCDIAEYDTIIQLTDNYPVASMSSNEDCAYIDVYERLTSSYTTVLVEDTLAPLIEKLDLLALQEPTILCFSWQMERNYIVDYRIEQLIKAGNIVVCAGGNQDLPVLDITPVGVDGVIRVGGQKHNGYYQNWIDIYDITDPNEPNSNKAVHNICTKMVHKQLELDFTLGYYSDSSVRSAPWPLRLAQTPSTEPKYYEFNPVSNLRYCAGEHLLPVRQGDQVSVIYGGVELENYIGSDAIQMGTDMPRGLTFDTQSGWLYGTFKVKVPMFHRFVAEINGQIFEYHIISCDADNKLTYQDVKETYYNRPYDAPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYREYE
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