Scaffold Ga0315320_10044677

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10044677
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3476
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F018267	Metagenome	236	Y
F034211	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_100446771	F005547	GGAG	MKVWVMQGSYEGELFSSVHLTEKGCALACISDITEFLGVDDEETALQVMNSRYAYSETDGEQTEAFEWDQNKLKEMTSRQLWKVFADWSEISWDAMSDRSYYLDAN
Ga0315320_1004467714	F018267	GGAGG	VRVGDLISFKPKSFGDDDWSNPCIVLDAFVNDDRRGGGFKDTIWVVWCDGGKYMVNPRNDDIMYLTSSSHLKA
Ga0315320_1004467715	F004771	N/A	VRMHTHDTGLVGIVLERHPKAISTTPAQIGIKWFGGSGKTDWEPEAWLEVVSEGR
Ga0315320_100446772	F034211	AGGAG	VAYLKTDDLVIIPNKDGSNLQARVVDMQFRRFRRSWKDKASGETKWKWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGPWIEKMIEDSRAKRESAK