Scaffold Ga0315320_10023360

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10023360
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4914
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F029710	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_100233605	F007770	N/A	MSGEGHTTSFKRTAQTSKSNEQLLEEFKRLVYSSKKIMSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDSFEFYISTYESWGKDSNYYECHKTEGSFVSLAREFAHNNKLMYFPDGFPAEWIEQEIIDGEKKWNHFIVKPDDKNIDKICDVWYRYGIMKLQALDEKVESQLWCEARDRIKEIMEHKNESRVYCS
Ga0315320_100233607	F029710	GGAG	MKNENAKLGEEGWFSWLAIRQDLVEDDLSIPIMWLDDMSEDYLSHSDDMNIDCVEGMDKEGAPIIDGDHLGRDICIEVTCPSKNIDKRRAVGYNIDFDWN