Scaffold Ga0315320_10011288

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10011288
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7183
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032075	Metagenome / Metatranscriptome	181	Y
F032266	Metagenome	180	Y
F046979	Metagenome / Metatranscriptome	150	Y
F077948	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1001128810	F077948	AGG	MKDYAHKLHKPRPIKAWHDVAREITENLIFVALMVFCLIIIVKAVI
Ga0315320_1001128812	F032075	AGGAG	MSKLHHTKYKENYKNYILDCIDSEDDLINQELTRDQKIQYLFNRFNSEYGWNIQRVGKYKAMEEWLSGLAINIPYTYFDIIELAKEMGSIDSNPSQALEDRVCENYFSFMAQMVLLLEDELEEVA
Ga0315320_100112882	F032266	AGG	MELKKDTVKAVIFIEDAINLSHDALKKKFKEAVDNNTINHFEIKTRGTKND
Ga0315320_100112883	F046979	N/A	MKLEREKNISRYNHCFDLKLSFSCLECGAVVNAYPPKDDAIKLGEQHHG