Scaffold Ga0315320_10010309

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10010309
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7521
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F054842	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1001030910	F022282	GGAG	VNPSFRYQLGDLVEFKRTTRVTEEYTDVEKLTGIIVEQRYVFTADNKFKVRTPDKDYWIRSDHLTLLSSGTK
Ga0315320_1001030912	F054842	GAGG	MSKNGWRKKLKAGDLVMMKDGGMAILTEVYFRFPETDPAYPHIKMLYCDDNSTGGCSAWRVEELISEAR
Ga0315320_100103093	F006383	GGAGG	MLDSTNKMWAVQQPGTLLRGRSSHHYGKLALVLEEAYDGPTPSNGYPPRRYVKMQWVATGERFEEMLTNAHNCFEIVSKP
Ga0315320_100103094	F021674	GAGG	MERETYNSRLRSNPEDIPVGSLLQIKKHCRKNSIIKEHGEFAILVERPHGTYISHDVLFPNGRRTIFVPMNWEVVSYARQH