Scaffold Ga0315320_10004852

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10004852
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11010
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F008346	Metagenome	335	Y
F009521	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1000485211	F002221	AGGAG	MSNYYDEALKDKLKQLRIYEAETIVKWGNWKRIYKMVGVEFEIKFLKADQMLKTSLQKDLIKKQIDMVDMMIRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALVCDTDDDKPVLELIHKDEKDIMIFSIEELLRCIPQDFMRAKEILSKLDKSVNFQRVDYV
Ga0315320_1000485213	F008346	N/A	MAIKLRPSAVIKDRATGKLKTEHYYLKSMTVKELNDYIESSSSKKKVIQKCKNELTRRGK
Ga0315320_100048522	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRSMSDTYKNYTCDILAFVFFFDSQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLQESLDTLSSVPVLNPII
Ga0315320_1000485226	F009521	GGAG	MKYKLIINNGTLKGFIAFRGSCLATMQDKFNRLTNQGHQLKLIRGK