Scaffold Ga0315320_10002030

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10002030
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16755
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (39.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001377	Metagenome / Metatranscriptome	711	Y
F003770	Metagenome	469	Y
F008885	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1000203017	F001377	N/A	MISNWIFWAIPPNYVRRYLITFWVVMFFLPGYILGLQFTKLGFIINWLWLDLVFYGWFRAKQTLGDDE
Ga0315320_100020304	F008885	AGGA	MATVIPKYNRIVQDQPQEAFYMVSIDTSSFLDTTSNNAGRISPCVAEDFATAPTTLDESRKISRGALRFKKMLEGLQVRSNVSLRNILTTYAADEGDSPITKLQFGLVYDNDNFLPKTGTAGDDSTATTTKVGFIKDKISEALYGTFTERMQVMNPTAGAGLIKNEEITAEAVLLVSQDEIMEKITVTEAVDTATMVSGFRPTLASELATDNADSDTAE
Ga0315320_100020307	F003770	N/A	MFKMFAIMCAVTVMDCTTHYENPPRTFNTEAECQEALVIKQEETVKMLSDEDGYLTVAHLEIGCTNIYN