Scaffold Ga0315320_10000681

Overview

Basic Information

• Taxon OID: 3300031851
• Scaffold ID: Ga0315320_10000681
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28024
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F005816	Metagenome / Metatranscriptome	389	N
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315320_1000068117	F005816	AGGAG	MDLTNFNVDASSEGKTAVEPGRHVLHWQGEEEALVEGRNGWRGCKMYFEIDGTSIRLNHTFTVGHDNPKYVDSGIKSMILMGQAMGLQEPPKDTSSAFMGKSVSAELIKDDNGYLKINEDWGKTWQATNQKPKPVVEDDNIKAGPSEADLDAMGSTVASEDDAPF
Ga0315320_1000068124	F087206	AGG	MSNHYNEQEMEDIQNYVLEQDRKGLLEDEIGYISFAYGLHPDDDRDEILEFITETILYEKNVGGLI
Ga0315320_1000068125	F035770	GAGG	MKPYKTITFGMAEFAYARHLREELGHTGEIIYPNKDASKQDRDGVWLLLTITGERLGTVSPDGIVRTT
Ga0315320_1000068126	F002399	GAGG	MTIKNKSHKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWKDFSEALTFPNGKPTRDK