Scaffold Ga0315290_11404077

Overview

Basic Information

• Taxon OID: 3300031834
• Scaffold ID: Ga0315290_11404077
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 571
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002933	Metagenome / Metatranscriptome	519	Y
F041079	Metagenome / Metatranscriptome	160	Y
F092031	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315290_114040771	F092031	GGA	MVTKKPLAKAPAKVAPVKRRTPKPKAEQTINVSVAAPAPVKAEAKKDDSTLGKVIGLIEWVD
Ga0315290_114040772	F002933	GGA	MIPPLYKWYPMVQPGGEPTKTDALERRAERMQEEYAQALKMKKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKVDILA
Ga0315290_114040773	F041079	N/A	DKNAPYCKSTEYLVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK