Scaffold Ga0315290_10594784

Overview

Basic Information

• Taxon OID: 3300031834
• Scaffold ID: Ga0315290_10594784
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 961
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F066591	Metagenome	126	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315290_105947842	F004450	AGGTGG	MNWLAATLIALVMSAAYLLDGPSEHDARVDTAEEKIQKLCGENAGWKLLADGSIQCFTHRGFKTRKVTL
Ga0315290_105947843	F066591	AGGA	MRVLLRAAPSSGLGIPWRQGVGMNDNEDYELANLMFVIASCILGLFALVGIAGIAGFLWGML
Ga0315290_105947844	F085065	GGGGG	MTKQEMLNLLKLLSAIEGAIFTNTAQVPDHLFEQIGAAVAVLEREILE