Scaffold Ga0315290_10382193

Overview

Basic Information

• Taxon OID: 3300031834
• Scaffold ID: Ga0315290_10382193
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1234
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F018836	Metagenome / Metatranscriptome	233	Y
F020527	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315290_103821931	F020527	N/A	GRRTTGTKAAYEELLGRQATEEEVTKAQERFNQGYYSSVQDLKDSLTKGSEYQDKFNTSYLDNYYDTMFGKQGTNEAGKKTGQRSFKFDKNLLPTYSDTNLSSRAQVTTPDFKDTFTGTPGEIQEQLQNVRDTRQYLYSAGLTNLQGEIDKETQKLKNEGGKEIAKISSQGDLYKQLVGAFSF
Ga0315290_103821932	F001190	N/A	MSSTPTGQSGTDDYFDITKFEELLNRLESSKGRQQRQKSLEGRRDIFAGGLASMMSNF
Ga0315290_103821934	F018836	AGGA	MTSSVPAGQIDADDWFDLDKYRQAAGVAYDFSKQKMETAGAQERETIGKGAAESRASAEHQDIFRRKDEERDSGQAQR