Scaffold Ga0315290_10158353

Overview

Basic Information

• Taxon OID: 3300031834
• Scaffold ID: Ga0315290_10158353
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1952
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009064	Metagenome / Metatranscriptome	323	Y
F032579	Metagenome / Metatranscriptome	179	N
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315290_101583534	F052382	N/A	MGLHMSSYGKRKGATFETSVVKWLRLKDILAERLTKAGAKDEGDVVAFLDGTANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVVVKRRQAGIDKAWVVEDFEQWTKRAG
Ga0315290_101583535	F009064	N/A	MIIELSKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKYYNLAWNNPWYPNALHKKRYPLPDVGENLEVRSIRTQDSIAFWGKDKEKVIVGTKCLDLEYFSKVEIFGVAYPEEFMKPEYYDSYINGWRIPIDGFTHE
Ga0315290_101583536	F032579	N/A	ICTLGVIGTSMGVAPVKNRYGKADAGGGLMTWIAFNPEYMFVDDIPENN