NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310917_10219902

Scaffold Ga0310917_10219902


Overview

Basic Information
Taxon OID3300031833 Open in IMG/M
Scaffold IDGa0310917_10219902 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101601Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0310917_102199021F101601AGGAGGMATATSTITPSLTPSQQAAREFWRQAGADGMPPYYVMSQYYAQLSANSDNLPAVTAALEQLLTGLGYATDVDTVFAELTAGQGEELGYWAGRYCLFDSDGNRFDLVVGRDGATLTVPPALIDMTSLPAGTDIASVTVLNSVGFSDGMLQLANANALLPRNIALLRLQASLSFSLPVSDATLDAGAAAFQSTAPLCKGTFVVSGGGSAGLRPVNGKRGAWTQAGVNQTADGDPKEAWYGQYVLLDVTDVTA
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