NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1011279

Scaffold Ga0308409_1011279


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1011279 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F035322Metagenome / Metatranscriptome172Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10112792F016100AGGAGGMVVSVKIERFKEYSELVRVVSRSEKTPATNKDRIVPLNYELLIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQTNAGTWVADALVDFGDRRRLRRGEGDAPLQAMIELITDIQRY
Ga0308409_10112794F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPKPGTWFADVYVRYAENPSLDTKYSAYIGADNFLADTPIPAADRRDVAKAIESLVFDYGLVGLVIYPTREGWGVNITLCSELENQYIHGKGATPADAIRNSNYPPPLRDL
Ga0308409_10112795F014738GGAGGMKLDVLLLISAFALAFVHPDAAQVAASAVLLLLTVRIERGRRARKKKSAPVAH
Ga0308409_10112796F007404GGAGGVDIIEILQLLAAGHAGLTAADYLWNAVFGAIGAATAYLADTNGEVFLPRYDREQHSVELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPALIDKIAWFVERRRK
Ga0308409_10112798F035322N/AAGVGEYGSKTTADARRDEAAIALDRQIAPITVELDNSRYELMTREGVAVPNWAADVSDYAIVSGYYRNAKITARVITRERTTYTVSFNPDDFVTVLR
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