NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308409_1011191

Scaffold Ga0308409_1011191


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1011191 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2840
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029452Metagenome / Metatranscriptome188Y
F033055Metagenome / Metatranscriptome178Y
F092114Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10111912F033055GGAGGMWVYPNQVIQNDNWATNTGIDILLAMGENDGLYIYNTSPINLLHLGMPSEVVNCEVRVQSDGMNPPLLLNFYRAGTLIDSVSVPTTNNWVVHTLTVDRWDSVELLVGIGGTVAVDFLRAEPYGGSPTKRTLTGVGI
Ga0308409_10111913F029452GGGGGMIYEYRCAECGWLTVAKRTVEQRDVAPRCDRCGTLTKRVFPPRAQIVIPRAFQLECAREAGKLVLPSTPEEKRYWDTFGIVDDGE
Ga0308409_10111914F092114N/AMRELLSVNRQKLNDLLGDNPPRRDTWLIKCRRLREIVGNLPSNQIISTSIPEGHSNLLLININIKAHAIMQLIRGTVMDFGADNEPYQMQFAEFLASNELALREAIMQRLVYGLGAVCVVGDKQSGWRLQSISPNDLWWDCTTGDVMQPKWIAREYRDGDGTRYREVWYADVYHRYKVDSTDVETFTTPYGVIPIVLFPALFVPDTVYPISDVELACPQQFILDEIRRTYLNMARRGAGFYSVKRSSIEETELQRLQNPEEVYVLVNEQDAIVPIPTPAPNPEWQALEALAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPSGTAIPRALEDSLTSVNELMRADMVSNTADGAVGNNPVAQSV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.