Scaffold Ga0307413_11984038

Overview

Basic Information

• Taxon OID: 3300031824
• Scaffold ID: Ga0307413_11984038
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 524
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048829	Metagenome / Metatranscriptome	147	Y
F074492	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307413_119840381	F074492	N/A	MLLSKALQMQQDLEDKKHEIIIGNLENKIKEQSDAFEKKNFELQAAEGLLAEAEAKISEL
Ga0307413_119840382	F048829	N/A	FAFQNLVGEHLTKAEIEELKEYAQSCGYKPGALLFGGVDDEKLECIRDQTGAKVISTLSKSIGFPKLETDISRCRRQHVVGSLFYSNFKVNDLSLNLYCF