Scaffold Ga0307413_10332886

Overview

Basic Information

• Taxon OID: 3300031824
• Scaffold ID: Ga0307413_10332886
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1165
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000651	Metagenome / Metatranscriptome	959	Y
F001264	Metagenome / Metatranscriptome	735	Y
F012099	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307413_103328861	F000651	AGGAG	VYEPITLEIDTGYGEGNYLSYTINFVGRLIRIVEAGHTTMRLYEWVDRGRLLYLVHVEEEKPGKPTRRILYPFINTHSGGATPRKGYTAEEVSRAYPELAAGRFLGLTRNSRQRGRD
Ga0307413_103328862	F001264	AGAAGG	MRAEQTVSEMAQVVLSRHARALAQRTGEPLVEALEAVVETPAGMQLEELRSGPHQDEEVRYWQANLLFERVSEQAGHPPAAV
Ga0307413_103328863	F012099	N/A	MCSRCGADLGTFVHDIRDREGRLPDNLTHPWFYDARGRAKQHEHDEAAYLEGSPWRYNDITASPNEE