NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307413_10310116

Scaffold Ga0307413_10310116


Overview

Basic Information
Taxon OID3300031824 Open in IMG/M
Scaffold IDGa0307413_10310116 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033335Metagenome177Y
F051754Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0307413_103101162F033335GAGGMSEGELDRLRRVVERLMAGHREALGVIDQEVEDRESSAQETLAEVQDILSGAYDDAQSILGGEEGAG
Ga0307413_103101163F051754AGGAVAAQSPERAGGRREGPAKEEASGLSERHIDAEGERRLKEAGFLPEASHVGKRRWKDPDTGRVMPGGAALDKVERREEQELEEAGWERVEVEGRIAWRRPDTGHLYPRGAAYDVRRRRDQR

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