Scaffold Ga0307478_10021607

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10021607
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4551
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044616	Metagenome	154	Y
F047848	Metagenome / Metatranscriptome	149	Y
F097887	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_100216071	F097887	N/A	KQIGRIDQSFSKDKSVTVHEIRNITTITVRDRNTGKVTTETLIGQSPFGTSE
Ga0307478_100216072	F044616	AGGAG	MRSPSSEKIECPLCCGAGELSRAEILDRLGVKDFARVAQLSAEEAFRLLTQKHCHEEQSAWSRFETELAKRTAEIRESHKDALRLATSERENLSRRVEDCLRELAQLREKNHLLEGEMSKVARVGKREEMDFAEEARTWAGVWISDKLPRNGDFILAYRATNGEPTEPKILIDNKDKSAVAEGDIDKLVRDARERSIPVAALVARDENQLRQVDRDSRWSRRDGVWLLRTTRQWIVRDLDLLKPIFERMRVQGCDLLDRNAVLAEELRRTFPEIDRIEKELGKAAKAIQSVSALVVRYKERLRELCDSSAFRGLANAPERDDSMPIAPKYQLEGNGR
Ga0307478_100216074	F047848	AGGAGG	MDYVHVFVLRTLCFDEHGEIKSLNVALTFDMFEAEDHRNKGVENGYDTFVVPGDWREEQ