Scaffold Ga0307478

Basic Information
Taxon OID	3300031823 Open in IMG/M
Scaffold ID	Ga0307478_10006230 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8297
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8297

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_100062304	F004186	AGGTGG	VQPHRPLLILAVAVLAAGCGVPTAAPPPTAKEVLAKPQQSNLTDAHFAVSGKITNAGVTVQLVGDGALVYKPKPEGRFTFTTTVGGQALTIEEISLDGTNYGLTPASNKWTATKSASGIDPNAFSGATNQKYIGEETLPQGKAWHASATDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDHYNTGAIITAPPASQIQTP
Ga0307478_100062305	F004003	GGA	MTRALRFATAMAVTALLAGCGGPGAPLGPPKPQDILAKPSHTGSLKDAHFVVTGKFTNNGTTVGVNGDGALVYKSPGAGRFTFQTTVAGQQVSFEDISVNGTDYSLTIPGNGKWTATASTSGLGPSSFTGTSAFKYVGEENLPSGKAWHASANDKDGNPFDGWIRESDGYPLKYVITQQGNTLTLTFDKYNTGAAIAAPPASQVVKG
Ga0307478_100062306	F004349	AGGA	VQSNTRATLAVTALMLAACGPMQSQAAKLPTASEILNKPDQASVKDAHFTLIAHIVSAGVAFDATGDGVIVIKPAQGSKFTMMTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLAQGKAWHVRAKDASGSPFEAWVRESDGYPLKYATTTQGSSFTATFDQFNTGQTVTAPPSSDVQQ
Ga0307478_100062307	F006952	GGAGG	VIGPLGTANHEIREAEQRDRARRRARLAEPRRLTDELLGHLEELNLDGVRVVPCSYDPGLAEIRSQLEGWPGLGTPLLERLQSGTRTAELIETVFSIQEVIAPPILPPGAVIFDEPDLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307478_10006230

Overview

Ecosystem & Geography

Associated Families

Sequences