NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10003465

Scaffold Ga0307478_10003465


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10003465 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11705
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059161Metagenome / Metatranscriptome134Y
F084158Metagenome112Y
F099197Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000346511F099197GGAMAKGIPTPKRRPRRAAGGLGPPLDRALILKLAVEMHQITQDVLSKLNVTPKEQRLAALQARRTRKRAWPSARLMAAINGAGDVLSTWRRDKRYRSADGSPRVLFIRGKGATLESLARKCVPQMSLEEVLTYICSHGEAILYKEDRVALLGSAAVITQRTPEMTLAWLLTQLRHVADTTLRNTSVPAHLVKGTGMFQRQVAGWLSEKDFRLYTKEVFPQLQELCAQLEAGLSIDRRAKPRPNRKECGVGIFLYQDTGRIG
Ga0307478_1000346513F084158GGAMPNRVRSKKPIRFRNRGDSPLIPATRDKRELLLKLAQELQAMTIESMEGLGVSRKEQMLTYRRASRGVGNKARPSAPLIDRISGIADLLSSWRRDRRYVQEDGLPRVLRIKGKGASLESLGKKFVPDMSVNEVLVAVTRHGEATVYQGDRVALVGGSVLVTPKTAEMALALLVSRVRRYFKTVLHNVSLPEGSKGHGRFERQVFGVLSEREFRQYAQAMRSQMQDLCDRAESGLELAADKRGRKRKACGIGIYVFRDD
Ga0307478_100034655F059161GGTGGVKSNIVETGFSRSAHLASGAATGAVVLLVRGCALALFLAMSMAEPFLAVVLSALALGCFFVAVLFGFIFHAPFPHRWFVLGASVVFLLTYVLYRFLMQGVQRLLR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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