Scaffold Ga0307478_10000718

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000718
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32398
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (92.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y
F026317	Metagenome / Metatranscriptome	198	Y
F033374	Metagenome / Metatranscriptome	177	Y
F070346	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000071810	F033374	GAGG	MEPNWKPLVDKLGEEQSVGFMFMERVNGINLYKHGIARKYLNLDDSGCVCVCYEKWRFKKADFDDQLGKLEAVLAQLGETLQTVYDESYIEQKKKALQRFGIPYERIEIQPKDLSLN
Ga0307478_1000071816	F070346	GGAG	MKRLFAMISPRWQRPLRFAAWGMFIVFVSVNLPFLFDLMSRGIAWIMGLFPHADELWKECPWCF
Ga0307478_1000071821	F005419	AGGAGG	MVAAGATEAVGQGKGPEAVTSLRGTRKMRSGQTNGVEGQRFFLAKPGGSHGVPEFSKEFAGEPEAMVESLKTGLSYFVVSEWRGVADFSGKKPQLGREVVRSAPKAG
Ga0307478_1000071824	F026317	GGTGG	MSLFVQLLEAIAVLVPDFLTLGLVTLAFFNLYSIARTLDIAGTLETDSALQVSLALGYLVTIAINIVGSLLTSARPTIATVIQSKSRVEQAGRESSPATLRPQPVRHEDAIIES