Scaffold Ga0307478_10000591

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000591
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36147
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034385	Metagenome	175	Y
F055023	Metagenome	139	Y
F060714	Metagenome	132	Y
F089190	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000059110	F055023	AGGAG	MKTEDELDAEVSKLFDEVTTTKVEMVNGKPRISDQATLDQMEREDAARRMEEACGMFLTAERRFQKLCDHPDKVSDPKVNVAWWESLEQVYERERVVWRLFVGPQPTVADNKLYAKFRKLLLEGSKLKSDA
Ga0307478_1000059126	F060714	GAG	MSETRDCVVKLVDDHGVEHSVRVRAESVYEAALKGLQKLERVGWESSGEQIGWVTVEVWEEPTRHRVHVGKMLGWIRSSGRTPRDETRKWELRRLLRNEK
Ga0307478_100005916	F034385	AGGAG	MCDIGKPIEIIDVEPLSLPAPLRREKEQPTQQPATVEAPMSTETPVEPATVAVDKG
Ga0307478_100005919	F089190	AGGCGG	VPKVVSFRKPRRLTPEIVGELLRIHSSCVHDQEGKCPLLVSVPSLTWELNQAANIGNEEDNAFRRVDPTCAARPLSDHDIERIIEGRRLADSMNEEPE