Scaffold Ga0307478_10000562

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000562
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37477
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F008572	Metagenome / Metatranscriptome	331	Y
F030852	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_100005622	F000078	GAGG	LENLYCLRCNRELEPGQKSVAIYMFAQTAGIKPRLKSASQRICFCPQCSVSLAMGPPPEGALNIAAWQMIRDLVGSDPALNQAAWDSLRGIIGLLPATGTDGGERPTRAGYFEF
Ga0307478_1000056221	F008572	AGGA	VVIAYRSENCLREFIAASSFVGLGFASHKEAIANLKHIASDAASSKQKPRITAMFHPTHENGDLPSGHGPVKHRRIPQSIMQSALAAVIAFFYSKNIVSVMIRMALGASF
Ga0307478_1000056223	F030852	GAG	MEDEKIDEQEIWSAIRYLDPDEKEKDKEAAAVTIIALLAILLICSGVWVLLWLRVMRL