Scaffold Ga0307478_10000497

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000497
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40084
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (86.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001128	Metagenome / Metatranscriptome	769	Y
F012080	Metagenome / Metatranscriptome	284	Y
F032374	Metagenome / Metatranscriptome	180	Y
F046901	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000049727	F032374	AGCAGG	MGTLRCDGCGEEFFIGHNPQSVDKWAAEKQANWLEKALAEEHEREKKHSDRIELPD
Ga0307478_1000049729	F012080	GGAG	VSRANGESEKQRVWRVLSEAGLIDIPPDEFAGRIQEAKHVVMGRLSELLEATTDIQERESAAYSLATLKKLERTVSRSRRRSSD
Ga0307478_1000049730	F001128	AGG	MRPTAKQAGTAANWPPEEGQIISFRSINGLSNGIVKEVRWGLVWRDFILDDGRVIPEHKILDHPEPPVWRRAEEVTQGERESWERRLVSMAEAGSDPRDQEQSFWAELNQYLAYTYLRFKPARSNPPDPE
Ga0307478_1000049740	F046901	GGA	VIVKGQKEQFLDWLSWGVESGAVSLPAETGSIRWPTLSLEDLFPPAD