Scaffold Ga0307478_10000354

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000354
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49112
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (82.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F017625	Metagenome / Metatranscriptome	239	Y
F018762	Metagenome	233	Y
F036795	Metagenome	169	Y
F052529	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000035412	F052529	GAGG	MRNIARFALFISVAGIGCFACFAQSPSTAAVMQQQGEQAASTADAGVTPLAYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIVKQIEAPTPKAKLPVETNMLVYMASGRVVDITLKAGKLEGTAYSIDYAVPKAEPKDPQPKKDDPPSVSPEEMEKKLREKERLELVENMIAEVKEHPKSQLGVRAGALHFRFYAIKRLDAIALVSFDVENTSSEIVDLEDPQINLITAADKTKDSKKPPAKVEPVELTQSIVSSKQLAPGARSAFLVVFKPPVHDSDQQVVLSISNRAMTDKPATYRLE
Ga0307478_1000035415	F018762	N/A	MRQHSKKAAVLSLIATLALLVPVTARAFIGTMPVIDWTALVRIGQQIGISQNTLNTLGLYVQQYNRVNAGGQEGIGLVRGRQLEGILNQGVGSEFPQFQQLQRDFGTALIDPSTLRGDLEETYGAIPSTDFPVSRKKRMDSADATATLGLLESSHAELVSQQEELDADDIESRAAQASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLEALNIARENSVEKEGEQSRVDQVNAVSNLVNSMQLSYGIGDRIGH
Ga0307478_1000035418	F013999	AGGAGG	MFYVISRERRINLRGFARPIGSAVASLLLSSPAFAQFGGDRVTSFLSNALSYAQGLGIFAAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0307478_1000035420	F017625	N/A	MPRKKRPQRDDFNEVEFRDFLKTYLSESFPNRQRIGCPPVSDLQRMAECPVEARDAEVSEHLTCCSPCFRHYMEILAGLKRKAG
Ga0307478_1000035422	F016649	GGA	MRDKQLSVLLILSFAILSLAGGCVSRPNISGLWKGTIQASGAGGKDKWQGPAELTLNQNGDAISGTLVFTHPQAGRVQVPITSGILSKDAVTFSGQNQFPMGSLEITFHGTLASTTLTGTADMTSRSVLIGPQANVASLDLKKQ
Ga0307478_100003544	F007854	GGAG	MNTLIANQYGRVQGEAGGCGLTLCVTAQTPRRESVELQTRVDSIGQQLHLLAILRAVERRIEQFQLRDSKAGESAEPQSPFDETICGEEDLFRSNGAASKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHALARRALFTCKQVDLLLRDDLSLSVAVNVSCHGLRFSVQTPLWRSEFVISKANDLATLAVFKRRAINQEKTIPIRFGDDGNHIGLRKRNDGQVLAEFHYGESMERIPLSTLQLYELEILAQFALHRAFEPSGFAAGSPLPPETATAA
Ga0307478_100003548	F036795	AGG	MRLVWVSALLLLIASVASLISNRQTGRLIDESWTPASHVLSEPKLSELQRATPAYTAEIFARLPEPLREKFASKMWQALELMIFRSLVLWHVIPAFLIAMIAGLLEGRWARANQKSLVKVYSPMRFSLALMGLGFMPLLALLWITAPVAIPTTLLVFTIGAVAVISTRNLVVHAPTQF