Scaffold Ga0307478_10000352

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000352
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49277
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (71.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001399	Metagenome / Metatranscriptome	705	Y
F001893	Metagenome / Metatranscriptome	621	Y
F005712	Metagenome / Metatranscriptome	392	Y
F043068	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_1000035211	F001893	GGCGG	MGTIKALVGFLAIIAVFVCLFQVAPPLMANYSFQDDLKTEAMVAGANLSRTDDEVRNDILRKAREHDLPVEAKQVTVQRISTPGISAVYIEADYTVPVKLPGYSFDMHFNPTSGNK
Ga0307478_1000035230	F005712	AGGAG	MKSIRKYVYAAVLTVSALNFAPSLASAQEAAGNFTLDHEVHWQNAIVPAGKYRFTMGTQGPSELLMVRDVSGHGTGFMLLVTDTEVSHPSDVSRLVVVSRPTGSFVSSLQLPEFGMTLHFAVPAETHEVAKTVATTTLSAAR
Ga0307478_1000035232	F001399	GGAGG	MKLNDSISTYDVAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGTEPNLQPFLVRKVAQPIAMEGRSKRSAAA
Ga0307478_100003529	F043068	GAGG	MSTRHSIWLGESQGKSIHIYWELAEREEDGRVMRTPIYIAVDAGDAGQEVAVRLPKEIGMRLLMVLAPNWTEEIGQVL