NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000166

Scaffold Ga0307478_10000166


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000166 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76491
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (83.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002108Metagenome / Metatranscriptome592Y
F006072Metagenome / Metatranscriptome382Y
F007233Metagenome / Metatranscriptome355Y
F011500Metagenome / Metatranscriptome290Y
F025582Metagenome / Metatranscriptome201Y
F090756Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_1000016617F002108AGGMTQTAEQIALEASSARLEKGTPRPFRVKLRGSILTLIRLPNRRQVRGKLHQLSSTGGLVNLDKPLDEKLVVEFIFHLGETTIREKAQMLFPMWATQGWLQPFRFIDLPEASAANLENRLTAFMKGPQNPAS
Ga0307478_1000016618F011500GAGVQIPVTVTSMDRRNPFSAACDALIVSAQGCGLRASQALPLETPILLSNLPGGASASARVASCLPLGHDGKQFLIGVSLYNPGNIWGIANPPQDWDCDPCGAAASPGDRTSKSGNVWPYNVFSAQGEAHPGRK
Ga0307478_100001663F006072GGAGGVSKTAAVVLGFLSFMLFANISRAQLIPSGNVYVGLSESDSVDVVNRYTFRGWAASAEDMPFPRYSFFGAVVDTSGYYRKGIQQYDLLLGPRVSHNYGKWRPFVHLLGGFQRETSDGVTHYIVAEDVGGGVDRKFHLLFLHNFSWRLQFDYVHTRLLSANQNEYRGSAGLVWRF
Ga0307478_1000016660F025582AGGAGMPIIQVERKQIRTQIKAAIETELQERLRAYCRFSGATNDQVVSGALKFLFQSDAEFTPWYETHKHDAQPRRGPRKRIANEMATAAGSPIVDKTVPITASKK
Ga0307478_1000016671F007233GGAGGVETSMARQNQKRYRPKLNEDTFTDGIKGKVLQSVSISNELDCRYISLDFEDKTELTITLDTRLTGKLELFDCKTGDQELIKRVGLIPDDSPSWRPADKGR
Ga0307478_1000016672F090756GGAGVAANKKRKYPNAHQGCPGGPKCRHCTWDSMHISVEGPQSKYIKGHRGQYRGDIDGAIDDFLATLKLEARQLLRECAKKTPVLAQFHLEFS
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