Scaffold Ga0307478_10000006

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000006
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 350503
• Total Scaffold Genes: 332
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 238 (71.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F011862	Metagenome / Metatranscriptome	286	Y
F033152	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_10000006166	F000072	N/A	MDAERTIAEIELLERIFAVPDARPMSASDLWAVNRRHDEMLAHSPWFQLWQRYGVCCR
Ga0307478_10000006325	F011862	AGGAGG	MLVRAILVALTALTMSISAQTQPEVKRSADPSRDSIISIVNQIQRADYEGDRTALKRLHDELTPIPEDNKLASRVLYWRGFAMWRRAINGFNETPTPTDLETDLTQATADFKDAIARDPAFVEPKIGAGSSFGYLMYLHRKDQARVQELFQQSSPLLKEALVTAPDNPRLLWVLGPIRWSSPPERGGGQDKAFELYKRGLQEIRQQKPSSDRLEPSWGEPELLMNLAWSNLNRTEPDLKAAEEDAQAALKLVPYWHYVRDILMPQIQAARAKAAKQAAPG
Ga0307478_1000000674	F033152	GGAG	LSPSNPSAFKTTLTGKSVIVKISLFSRAFSGTIIAVDETGFCFDSEAMIAALRETTGSAMANMDAPSVYLTFASLEWLVSSQPKAAAASASGGN