NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307478_10000001

Scaffold Ga0307478_10000001


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000001 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020745
Total Scaffold Genes923 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)701 (75.95%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000269Metagenome / Metatranscriptome1410Y
F000279Metagenome / Metatranscriptome1383Y
F000323Metagenome / Metatranscriptome1300Y
F001709Metagenome / Metatranscriptome648Y
F002461Metagenome / Metatranscriptome557Y
F003278Metagenome / Metatranscriptome496Y
F004328Metagenome / Metatranscriptome443Y
F004899Metagenome / Metatranscriptome419Y
F006150Metagenome / Metatranscriptome380Y
F006156Metagenome / Metatranscriptome380Y
F008368Metagenome / Metatranscriptome334Y
F014289Metagenome / Metatranscriptome264Y
F024406Metagenome / Metatranscriptome206Y
F063945Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000001222F006150AGGAGMESFRICRIAAAGLLFAMVVAPCTTLIGRDEPTIDELKARVANTSNSDRPPLCIRISERQLEETQKLYAAGDIEKWKDALVDVVAFAELARDSSIQSHKHEKQCEIAIRKESRKLADLKHTVSHDDQEQVQNTVDRLEKVRDDLLLAMFPKGGKK
Ga0307478_10000001312F006156AGGAGMKQIKYVAFLSMLALLSSVSALARDKNQHSVEIPDAVQVGDTKLQPGDYRLEWQGTGTGIPVNFVRGGKTVATVPGTVKTNDARVIQDDVVMATTGAKTKTLTEIDFGRNKESVVFEQSG
Ga0307478_10000001409F001709AGGAMQGPTVWLADCYSKKQRAPTPMPQEVSVSYQAVKSKVYRLIDALVVGEKTEAEVQESIRRWWELIHPADRPIAQKYLSIILERSCLALDAVETGLTEANQTTPRPLEAAKTLKIVERVVKQTTFSTTI
Ga0307478_10000001410F000249GGAGGMKTLSWIFAFAVLVSVSGGAQTTAPANPSKDAKAEDRMFFPRDMFWGWAQLDLAPPHNEIDPNLCAGNARQYGGANAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKNVPQTLYTWSPDAIGIEHSWGAGIYIAKGFEFRVTQHFLFDRLGARDTNLGAADLGNNGPWGRYATVGVRKYFGTRRW
Ga0307478_1000000147F063945N/AMKKLRAVSKKRKRERGNAFPGLKGKVIHWVETSFEDDRLYIHVRFVDRTELTFWLSARIVIEEATLSDWKTGDDVIKRTYIQSPEVKAIAAQEPEFQRICREIEREKKRKGK
Ga0307478_10000001629F004328AGGMPDQTPNPTPVPPSTQNAQANSPAAQRGPTINIADEFGTAKRNLPPVKVLLMATAAVLIIVGIASFFQRAKPQGAGSLDNIAAVDLPGQNSVLVALTFTLHNSGKKSLWVHDVHGKLLTSAGESSGEAVSAVDFDRYYQAFPALKQNALTALSPEDKLQPGEEIRRTVMVSFPVALDAFNQRRSVSVVIQPYDQPVPVTLTR
Ga0307478_10000001657F024406N/AMKRREQWQPILEAEVKKWSAKSLVELVAELPNEQAYEIEFEGKTYQVELQLLGNTKKFLHVGVSVDDGSVPASFRPLSSSFIREK
Ga0307478_10000001696F000279N/AMDVSYFAEIKGLVGWYCRAGLVFKVRDLKTVDKLNSRSHSMTQKPEDGAIEEIILPENLLPLGSVLSEGITPLEVSMVLAKVFKVQNAEVALLRLDSGLLKFIFPEHLVTTGAIPISSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPIGVEADPELQAHPAPIQKLMSVPILDQNSTVIGVIQISRKGLDPRFTQDFSREDLHDLELAAGVLAASPVMQVN
Ga0307478_100000018F004899GGAGMLRVECHDIGDTVTLRLEGRLVGEFAKEARDLVTCRKIPLRLVVNLSEVTFVDLTGEEVLLWLARIGAEFVAENCYPRHVCERLHLPMAAERRSDGFPSLITHRQKRR
Ga0307478_10000001812F000269GAGMEIFSRTLRTLTLVFSLSLLQAFAATASEQPTSKPTDVPATVIAHLPLPQATGSQMLLQKEKGKVYLYIQQAAKQGFMIVDVSKPELPTLLKRTAESNQATSGNLEMVSPEIAIAEAPEKTPTTLTSNSHPTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHGLIYLTNNDGLYVLRYSHPSRFEPAKTKPPCTSESEIQAMPPDCQ
Ga0307478_10000001813F000323AGGAGMKKLLFVTLLLSGSLLPARDSTSANTDQQGSKDSKGQVTIRGCVSRSNGDYTLMKENPGITYELQATGKTRLKHYLGQRVEVTGTEGPTMSSSSDATNKIGSAAPVTLTITSIRTIDKDCSEQSVSR
Ga0307478_10000001845F002461N/AMVPRISERFVRALKSSRVKLSLLVWGPVVLCLPLLCPPQFISAQDDPGDAPLGDVARSFRRKPVSSEAVVDNDNLSKVVDDAESRRAAGSSPVFSLDAGGKSFHVSSPDVTCSLSFSAKTTSLVADPLLLDELPSSELAKLDGPATLDGDSLQVSMHNGTSWELREVVIGLTILRRPEAGNASSSSRYGRARIVPAVADTSQQVQDSFQKQPDVTLLLRVKGSAAPSATAIFRTSLNFALFPDQEWHWAIVKAKGIPPPTVPVTITQPAGEPRPALHDSGTARLPANPSSSNLSSPKPDIATH
Ga0307478_10000001869F014289GAGMEVRRLGKLTAEDHAAGQYDLHDRVQVLVNGKWMEGEIRGQNLNMYDIKVPGVDTGFGSDIVNTTPENIRMSTTPAPPPPAQRAAGQAPKPGLASCAGKYEGRWEHVSGMGGMKVVFRSGKATITEGLGGEMRFDCFTGDGKVVFYKAGSFTPFSYDFDINNDGTLQTPLGAIKKMGN
Ga0307478_1000000188F008368N/AMNKAESDRIHELCSLIAVEQDHQRLQALIGELNRILSAKDQRLQERKEDVRKSD
Ga0307478_10000001886F003278GGAGMLKISLLDNARRCRVIVEGKLIAPWAAELKSACEKARADLRGRELIIEMRHITTISQEGENVILEFINEGIKFRCDGVFAKHVLKELSRRAGRNLGEVKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.