Scaffold Ga0307473_10124136

Overview

Basic Information

• Taxon OID: 3300031820
• Scaffold ID: Ga0307473_10124136
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006513	Metagenome	371	Y
F022537	Metagenome / Metatranscriptome	214	N
F023562	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307473_101241361	F022537	AGGAG	MKIATLLLFSVMMMSPSATLFSSPFQKDKPAEVDRAEQSLQTAKKELEGAGAEWGGHRVQAIKHIDAALHELEL
Ga0307473_101241362	F006513	GGA	MARVLTWVSDIHLTGWTCSACDWTFPLPSLLSDPEAKKAYDRLASAKFQRHDCATHQPVASLDPDTFMARAKGLVMRVFKPKDAAEIAASEIMFEKHDDPDIARKVQIEVNDFLRRLKEGLI
Ga0307473_101241363	F023562	AGGAGG	MSDPTWQELYNAAVLEFDLTKLPERVEAACDAIHQYRVRKHHALSAAEHSELDEALRVLFKLMRRAA