NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307473_10013044

Scaffold Ga0307473_10013044


Overview

Basic Information
Taxon OID3300031820 Open in IMG/M
Scaffold IDGa0307473_10013044 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3114
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022629Metagenome / Metatranscriptome213Y
F023300Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0307473_100130442F022629GGAGMWLDRYCAVCQECPDLVAVYEAPDGRIALLLRHTLVPLPEEFVSLRRTTRSAARAAADKLRAAGFRGGLMVLQWQPLGTAAAVMRDWPCRYEADTARRAQLAAVAERYAADERYLARQLQSRRHPSRRPLGAPPPFAASGELHGLQSWYDAMAPSWLSIEPLLRRALVLKTHRWIAEHILIPAADGRTPALEIRETIAALGEALIEMIPPDDRGVWSVWVGLVVGDLERAMRRPSADWNQGWARWLLLIAYSVPIPRERPTPVWPAKLTSLSALIR
Ga0307473_100130444F023300AGGAGMLRYQVLVAVMSMSLVVFLGHAMADGPSAGHGGIKVAQVSFIDRALNLIQLSDGMELRAPDQHMLANLKIGEWVKVDFVEDGDRTVINSIEAAQADEIPGPTPDAIGGITNHRT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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