NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307473_10012419

Scaffold Ga0307473_10012419


Overview

Basic Information
Taxon OID3300031820 Open in IMG/M
Scaffold IDGa0307473_10012419 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3161
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067586Metagenome125Y
F075924Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307473_100124192F075924N/AVAFLSEHSVKVVLLLLLLGGLVWLTTVSSPGDSVSVLHSRCAELKLPVRVIKIESGSDEESKFLLMVPSRQRVRLPESRWAFCRANLAIQAR
Ga0307473_100124193F067586GAGGMKSDDLFRDDLGPSSADESQTPGRAHLSGAGRSTALRAIIVITALAVAALVLYGILQVFVCDFREVVFKGMSRRAVWLCR

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