NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307473_10009676

Scaffold Ga0307473_10009676


Overview

Basic Information
Taxon OID3300031820 Open in IMG/M
Scaffold IDGa0307473_10009676 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3426
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007323Metagenome / Metatranscriptome353Y
F045260Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0307473_100096764F045260GAGMYKRLIVMLGMFLGIHAPAAAQTPAPQLVLVQGNVAPVIMMLRTVPAPLPPASFELNRNPGKTPAHFSHMFAGNYEPDRNIERLPPTYEVKTLFFTKSSLPLAHLWSGRMRLDGFMGTLNMQNVQLGPSAAGGLQDFRPPRESYPGGPRSVDLYGVSLSFHFGRNAGAGRPPQVWRCLSRIVGSARN
Ga0307473_100096766F007323AGCAGGMPRKLVWIENQNFQGFGCSECRWVFKPLSALVGESLDEMKQKYEAQRDKEFAAHVCLKHPRSAKSKTE
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