Scaffold Ga0316217_10018262

Overview

Basic Information

• Taxon OID: 3300031813
• Scaffold ID: Ga0316217_10018262
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5123
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016686	Metagenome	245	Y
F020532	Metagenome / Metatranscriptome	223	Y
F079985	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316217_100182621	F016686	N/A	IPGMETTVLEPQNLRPDIIHRVEAMDKESLLLLHRLLLSMEKEQLWRELSAEAETDHASGKFDRLTDIIREARAELRKG
Ga0316217_100182624	F079985	N/A	MHLLDIDDDALLLAFNEADLSPVHPAHPKNLLRAVR
Ga0316217_100182625	F020532	GAG	MRQPPRAVPKKPDYPEATSGSRLAAKTRKLASKLTPEEEAEHFRRGMAMIYGSQPKEITGARH